Hans Paerl and Jef Huisman have a perspective article in Science that reviews how climate change may promote blooms of cyanobacteria Blooms Like It Hot (320 (5872): 57 ):

Nutrient overenrichment of waters by urban, agricultural, and industrial development has promoted the growth of cyanobacteria as harmful algal blooms (1, 2). These blooms increase the turbidity of aquatic ecosystems, smothering aquatic plants and thereby suppressing important invertebrate and fish habitats. Die-off of blooms may deplete oxygen, killing fish. Some cyanobacteria produce toxins, which can cause serious and occasionally fatal human liver, digestive, neurological, and skin diseases (1-4). Cyanobacterial blooms thus threaten many aquatic ecosystems, including Lake Victoria in Africa, Lake Erie in North America, Lake Taihu in China, and the Baltic Sea in Europe (3-6). Climate change is a potent catalyst for the further expansion of these blooms.

Rising temperatures favor cyanobacteria in several ways. Cyanobacteria generally grow better at higher temperatures (often above 25°C) than do other phytoplankton species such as diatoms and green algae (7, 8). This gives cyanobacteria a competitive advantage at elevated temperatures (8, 9). Warming of surface waters also strengthens the vertical stratification of lakes, reducing vertical mixing. Furthermore, global warming causes lakes to stratify earlier in spring and destratify later in autumn, which lengthens optimal growth periods. Many cyanobacteria exploit these stratified conditions by forming intracellular gas vesicles, which make the cells buoyant. Buoyant cyanobacteria float upward when mixing is weak and accumulate in dense surface blooms (1, 2, 7) (see the figure). These surface blooms shade underlying nonbuoyant phytoplankton, thus suppressing their opponents through competition for light (8). Cyanobacterial blooms may even locally increase water temperatures through the intense absorption of light. The temperatures of surface blooms in the Baltic Sea and in Lake IJsselmeer, Netherlands, can be at least 1.5°C above those of ambient waters (10, 11). This positive feedback provides additional competitive dominance of buoyant cyanobacteria over nonbuoyant phytoplankton.

Global warming also affects patterns of precipitation and drought. These changes in the hydrological cycle could further enhance cyanobacterial dominance. For example, more intense precipitation will increase surface and groundwater nutrient discharge into water bodies. In the short term, freshwater discharge may prevent blooms by flushing. However, as the discharge subsides and water residence time increases as a result of drought, nutrient loads will be captured, eventually promoting blooms. This scenario takes place when elevated winter-spring rainfall and flushing events are followed by protracted periods of summer drought. This sequence of events has triggered massive algal blooms in aquatic ecosystems serving critical drinking water, fishery, and recreational needs. Attempts to control fluctuations in the discharge of rivers and lakes by means of dams and sluices may increase residence time, further aggravating cyanobacteria-related ecological and human health problems.